Re-check the upstream findings report against 0.6.1

Items 4, 8 and 9 are fixed (loader switches on reopen, package exports,
py.typed), so the report and the skill no longer claim 4-9 are all open. Item 7
is partial: DatabaseManager grew a DatabaseEventCallback, but there is still
nothing an external caching client can observe, which was the point. 5 and 6
are untouched.

The "are these files byte-identical" re-check recipe is removed: it named
client.py/registry.py/resolver.py, which 0.5.x renamed, so it would have
reported "unchanged" forever. The replacement is a diff of __all__ and the
DatabaseOpenOptions fields, both of which the contract suite now asserts
whenever the library is importable.

Also records two things that cost time here: the loader-switch strip needs
input_path != source, so an .i64 passed directly alongside load options still
fatals; and an editable checkout does not enforce its own dependency floors, so
a `git pull` to 0.6.1 leaves ida-domain/zeromcp silently too old.

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